Publications
Zhang J, Yao J, Jiang J, Pan Z, Luo M, Xia Y, Fan Q, Ding X, Ruan J, Handel A, Bahl J, Chen W, Zha L, Fu T (2020) "Migration interacts with the local transmission of HIV in developed trade areas: A molecular transmission network analysis in China." Infection, Genetics and Evolution Volume 84, doi: 10.1016/j.meegid.2020.104376
Kwon, J-H, Bahl J, Swayne DE, Lee Y-N, Lee Y-J, Song C-S, Lee D-H (2020) "Domestic ducks play a major role in the maintenance and spread of H5N8 highly pathogenic avian influenza viruses in South Korea. Transboundary and emerging diseases doi: 10.1111/tbed.13406
Hicks JT‡, Lee D-H, Duvuuri‡ VR, Kim Torchetti M, Swayne DE, Bahl J* (2020) "Agricultural and geographic factors shaped the North American 2015 highly pathogenic avian influenza H5N2 outbreak. PLoS Pathog 16(1): e1007857. doi: 10.1371/journal.ppat.1007857
Piedra F-A, Qiu X‡, Teng MN, Avadhanula V, Machado AA, Kim D-K, Hixson J, Bahl J, Piedra PA (2020) "Non-gradient and genotype-dependent patterns of RSV gene expression. PLoS ONE 15(1): e0227558. doi: 10.1371/journal.pone.0227558
Hicks JT‡, Dimitrov KM, Afonso C. Ramey AM, Bahl J* (2019). "Global phylodynamic analysis of avian paramyxovirus-1 provides evidence of inter-host transmission and intercontinental spatial diffusion. BMC Evol Biol 19, 108 (2019). doi: 10.1186/s12862-019-1431-2
Kwon, J‐H, Bahl, J, Swayne, DE, Lee Y-N, Lee Y-J, Song C-S, Lee D-H (2019). "Domestic ducks play a major role in the maintenance and spread of H5N8 highly pathogenic avian influenza viruses in South Korea." Transbound Emerg Dis. 00: 1– 8. doi: 10.1111/tbed.13406
Dimitrov KM, Abolnik C, Afonso CL, Albina E, Bahl J, Berg M, Briand F-X, Brown IH, Choi K-S, Chvala I, Diel DG, Durr PA, Ferreira HL, Fusaro A, Gil P, Goujgoulova GV, Grund C, Hicks JT‡, Joannis TM, Torchetti MK, Kolosov S, Lambrecht B, Lewis NS, Liu H, Liu H, McCullough S, Miller PJ, Monne I, Muller CP, Munir M, Reischak D, Sabra M, Samal SK, Servan de Almeida R, Shittu I, Snoeck CJ, Suarez DL, Van Borm S, Wang Z, Wong FYK. (2019) "Updated unified phylogenetic classification system and revised nomenclature for Newcastle disease virus." Infection, Genetics and Evolution, 74. doi: 10.1016/j.meegid.2019.103917
Qiu, X., V. R. Duvvuri and J. Bahl (2019). "Computational Approaches and Challenges to Developing Universal Influenza Vaccines." Vaccines (Basel) 7(2).
Kwon, J. H., J. Bahl, D. E. Swayne, Y. N. Lee, Y. J. Lee, C. S. Song and D. H. Lee (2019). "Domestic ducks play a major role in the maintenance and spread of H5N8 highly pathogenic avian influenza viruses in South Korea."
Kandeil, A., J. T. Hicks and S. G. Young (2019). "Active surveillance and genetic evolution of avian influenza viruses in Egypt, 2016-2018." Transbound Emerg Dis 8(1): 1370-1382.
Kandeil, A., M. R. Gomaa, M. M. Shehata, A. N. El Taweel, S. H. Mahmoud, O. Bagato, Y. Moatasim, O. Kutkat, A. S. Kayed, P. Dawson, X. Qiu, J. Bahl, R. J. Webby, W. B. Karesh and G. Kayali (2019). "Isolation and Characterization of a Distinct Influenza A Virus from Egyptian Bats." BMC Evol Biol 93(2).
Hicks, J. T., K. M. Dimitrov, C. L. Afonso, A. M. Ramey and J. Bahl (2019). "Global phylodynamic analysis of avian paramyxovirus-1 provides evidence of inter-host transmission and intercontinental spatial diffusion." 19(1): 108.
Ali, M. A., K. M. Dimitrov, C. Abolnik, C. L. Afonso, E. Albina, J. Bahl, M. Berg, F. X. Briand, I. H. Brown, K. S. Choi, I. Chvala, D. G. Diel, P. A. Durr, H. L. Ferreira, A. Fusaro, P. Gil, G. V. Goujgoulova, C. Grund, J. T. Hicks, T. M. Joannis, M. K. Torchetti, S. Kolosov, B. Lambrecht, N. S. Lewis, H. Liu, H. Liu, S. McCullough, P. J. Miller, I. Monne, C. P. Muller, M. Munir, D. Reischak, M. Sabra, S. K. Samal, R. Servan de Almeida, I. Shittu, C. J. Snoeck, D. L. Suarez, S. Van Borm, Z. Wang and F. Y. K. Wong (2019). "Updated unified phylogenetic classification system and revised nomenclature for Newcastle disease virus." Emerg Microbes Infect 74: 103917.
Kirkpatrick, E., X. Qiu, P. C. Wilson and J. Bahl (2018). "The influenza virus hemagglutinin head evolves faster than the stalk domain." 8(1): 10432.
Jimenez-Bluhm, P., F. Di Pillo, J. Bahl, J. Osorio, S. Schultz-Cherry and C. Hamilton-West (2018). "Circulation of influenza in backyard productive systems in central Chile and evidence of spillover from wild birds." Sci Rep 153: 1-6.
Ali, M. A., D. H. Lee, M. K. Torchetti, J. Hicks, M. L. Killian, J. Bahl, M. Pantin-Jackwood and D. E. Swayne (2018). "Transmission Dynamics of Highly Pathogenic Avian Influenza Virus A(H5Nx) Clade 2.3.4.4, North America, 2014-2015." J Virol 24(10): 1840-1848.
Ramey, A. M., I. V. Goraichuk, J. T. Hicks, K. M. Dimitrov, R. L. Poulson, D. E. Stallknecht, J. Bahl and C. L. Afonso (2017). "Assessment of contemporary genetic diversity and inter-taxa/inter-region exchange of avian paramyxovirus serotype 1 in wild birds sampled in North America." Influenza Other Respir Viruses 14(1): 43.
Qiu, X. and V. R. Duvvuri (2017). "Lineage-specific epitope profiles for HPAI H5 pre-pandemic vaccine selection and evaluation." 11(5): 445-456.
Tan, G. S., P. E. Leon, R. A. Albrecht, I. Margine, A. Hirsh, J. Bahl and F. Krammer (2016). "Broadly-Reactive Neutralizing and Non-neutralizing Antibodies Directed against the H7 Influenza Virus Hemagglutinin Reveal Divergent Mechanisms of Protection." PLoS Pathog 12(4): e1005578.
Shepard, S. S., S. Meno, J. Bahl, M. M. Wilson, J. Barnes and E. Neuhaus (2016). "Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler." BMC Genomics 17: 708.
Shepard, S. S., S. Meno, J. Bahl, M. M. Wilson, J. Barnes and E. Neuhaus (2016). "Erratum to: Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler." BMC Genomics 17(1): 801.
Ramey, A. M., A. B. Reeves, J. L. TeSlaa, S. Nashold, T. Donnelly, J. Bahl and J. S. Hall (2016). "Evidence for common ancestry among viruses isolated from wild birds in Beringia and highly pathogenic intercontinental reassortant H5N1 and H5N2 influenza A viruses." Infect Genet Evol 40: 176-185.
Pham, T. T., S. Meng, Y. Sun, W. Lv and J. Bahl (2016). "Inference of Japanese encephalitis virus ecological and evolutionary dynamics from passive and active virus surveillance." Virus Evol 2(1): vew009.
Lee, D. H., J. Bahl, M. K. Torchetti, M. L. Killian, H. S. Ip, T. J. DeLiberto and D. E. Swayne (2016). "Highly Pathogenic Avian Influenza Viruses and Generation of Novel Reassortants, United States, 2014-2015." Emerg Infect Dis 22(7): 1283-1285.
Hussein, I. T. M., E. J. Ma, N. J. Hill, B. W. Meixell, M. Lindberg, R. A. Albrecht, J. Bahl and J. A. Runstadler (2016). "A point mutation in the polymerase protein PB2 allows a reassortant H9N2 influenza isolate of wild-bird origin to replicate in human cells." Infect Genet Evol 41: 279-288.
Dimitrov, K. M., A. M. Ramey, X. Qiu, J. Bahl and C. L. Afonso (2016). "Temporal, geographic, and host distribution of avian paramyxovirus 1 (Newcastle disease virus)." Infect Genet Evol 39: 22-34.
Baranovich, T. and J. Bahl (2016). "Influenza A Virus Diversity and Transmission in Exhibition Swine." Nat Commun 213(2): 169-170.
Bahl, J., T. T. Pham, N. J. Hill, I. T. Hussein, E. J. Ma, B. C. Easterday, R. A. Halpin, T. B. Stockwell, D. E. Wentworth, G. Kayali, S. Krauss, S. Schultz-Cherry, R. G. Webster, R. J. Webby, M. D. Swartz, G. J. Smith and J. A. Runstadler (2016). "Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential." PLoS Pathog 12(5): e1005620.
Zaraket, H., T. Baranovich, B. S. Kaplan, R. Carter, M. S. Song, J. C. Paulson, J. E. Rehg and J. Bahl (2015). "Mammalian adaptation of influenza A(H7N9) virus is limited by a narrow genetic bottleneck." 6: 6553.
Su, Y. C. F. and J. Bahl (2015). "Phylodynamics of H1N1/2009 influenza reveals the transition from host adaptation to immune-driven selection." 6: 7952.
Manokaran, G., E. Finol, C. Wang, J. Gunaratne, J. Bahl, E. Z. Ong, H. C. Tan, O. M. Sessions, A. M. Ward, D. J. Gubler, E. Harris, M. A. Garcia-Blanco and E. E. Ooi (2015). "Dengue subgenomic RNA binds TRIM25 to inhibit interferon expression for epidemiological fitness." Science 350(6257): 217-221.
Lewis, N. S., J. H. Verhagen, Z. Javakhishvili, C. A. Russell, P. Lexmond, K. B. Westgeest, T. M. Bestebroer, R. A. Halpin, X. Lin, A. Ransier, N. B. Fedorova, T. B. Stockwell, N. Latorre-Margalef, B. Olsen, G. Smith, J. Bahl, D. E. Wentworth, J. Waldenstrom, R. A. Fouchier and M. de Graaf (2015). "Influenza A virus evolution and spatio-temporal dynamics in Eurasian wild birds: a phylogenetic and phylogeographical study of whole-genome sequence data." J Gen Virol 96(8): 2050-2060.
Karlsson, E., T. Fabrizio, H. Zhu, Y. Guan, M. Husain, S. Schultz-Cherry, S. Krauss, R. McBride, R. G. Webster, E. A. Govorkova, J. Zhang, C. J. Russell, R. J. Webby, U. Joseph, M. Linster, Y. Suzuki, S. Krauss, R. A. Halpin, D. Vijaykrishna, T. P. Fabrizio, T. M. Bestebroer, S. Maurer-Stroh, R. J. Webby, D. E. Wentworth, R. A. Fouchier, J. Bahl and G. J. Smith (2015). "Correction for Joseph et al., Adaptation of pandemic H2N2 influenza A viruses in humans." Nat Commun 89(8): 4706.
Joseph, U., M. Linster, Y. Suzuki, S. Krauss, R. A. Halpin, D. Vijaykrishna, T. P. Fabrizio, T. M. Bestebroer, S. Maurer-Stroh, R. J. Webby, D. E. Wentworth, R. A. Fouchier and J. Bahl (2015). "Adaptation of pandemic H2N2 influenza A viruses in humans." 89(4): 2442-2447.
Duvvuri, V. R., A. Granados, P. Rosenfeld, J. Bahl, A. Eshaghi and J. B. Gubbay (2015). "Genetic diversity and evolutionary insights of respiratory syncytial virus A ON1 genotype: global and local transmission dynamics." Sci Rep 5: 14268.
Baranovich, T., J. Bahl, B. M. Marathe, M. Culhane, E. Stigger-Rosser, D. Darnell, B. S. Kaplan, J. F. Lowe, R. J. Webby and E. A. Govorkova (2015). "Influenza A viruses of swine circulating in the United States during 2009-2014 are susceptible to neuraminidase inhibitors but show lineage-dependent resistance to adamantanes." Antiviral Res 117: 10-19.
Westgeest, K. B., C. A. Russell, X. Lin, M. I. Spronken, T. M. Bestebroer, J. Bahl, R. van Beek, E. Skepner, R. A. Halpin, J. C. de Jong, G. F. Rimmelzwaan, A. D. Osterhaus, D. J. Smith, D. E. Wentworth, R. A. Fouchier and M. de Graaf (2014). "Genomewide analysis of reassortment and evolution of human influenza A(H3N2) viruses circulating between 1968 and 2011." J Virol 88(5): 2844-2857.
Smith, G. J., S. Duan, E. A. Govorkova, J. Bahl, H. Zaraket, T. Baranovich, P. Seiler, K. Prevost, R. G. Webster and R. J. Webby (2014). "Epistatic interactions between neuraminidase mutations facilitated the emergence of the oseltamivir-resistant H1N1 influenza viruses." J Virol 5: 5029.
Shepard, S. S., C. T. Davis, J. Bahl, P. Rivailler, I. A. York and R. O. Donis (2014). "LABEL: fast and accurate lineage assignment with assessment of H5N1 and H9N2 influenza A hemagglutinins." Nat Commun 9(1): e86921.
Bahl, J., S. Krauss, D. Kuhnert, M. Fourment, G. Raven, S. P. Pryor, L. J. Niles, A. Danner, D. Walker, I. H. Mendenhall, Y. C. Su, V. G. Dugan, R. A. Halpin, T. B. Stockwell, R. J. Webby, D. E. Wentworth, A. J. Drummond, G. J. Smith and R. G. Webster (2013). "Influenza a virus migration and persistence in North American wild birds." PLoS Pathog 9(8): e1003570.
Smith, G. J., J. Bahl and D. Vijaykrishna (2012). "Genetic analysis." Methods Mol Biol 865: 207-227.
Scholarly Activities and Creative Works
Publications
1. Veytsel, G., Desiato, J., Chung, H., Tan, S., Risatti, G. R., Helal, Z. H., . . . Bahl, J. (2025). Molecular
epidemiology, evolution, and transmission dynamics of raccoon rabies virus in Connecticut. Virus
Evolution, 11(1). doi:10.1093/ve/veae114
2. Billings, W. Z., Ge, Y., Knight, J. H., Hemme, H., Hammerton, S. M., Skarlupka, A. L., . . . Handel,
A. (n.d.). High dose inactivated influenza vaccine inconsistently improves heterologous antibody
responses in an elderly human cohort. The Journal of Infectious Diseases. doi:10.1093/infdis/jiaf003
3. Rohani, P., & Bahl, J. (2024). Collateral effects of pandemic control. Science, 386(6722), 620-621.
doi:10.1126/science.adt3453
4. Forna, A., Weedop, K. B., Damodaran, L., Hassell, N., Kondor, R., Bahl, J., . . . Rohani, P. (2024).
Sequence-based detection of emerging antigenically novel influenza A viruses. Proceedings of the
Royal Society B: Biological Sciences, 291(2028). doi:10.1098/rspb.2024.0790
5. Grunnill, M., Eshaghi, A., Damodaran, L., Nagra, S., Gharouni, A., Braukmann, T., . . . Duvvuri, V.
R. (n.d.). Inferring enterovirus D68 transmission dynamics from the genomic data of two 2022
North American outbreaks. npj Viruses, 2(1). doi:10.1038/s44298-024-00047-z
6. Fusaro, A., Pu, J., Zhou, Y., Lu, L., Tassoni, L., Lan, Y., . . . Liu, J. (2024). Proposal for a Global
Classification and Nomenclature System for A/H9 Influenza Viruses. Emerging Infectious Diseases,
30(8). doi:10.3201/eid3008.231176
7. Kim, T. -H., Cho, A. Y., Lee, S. -H., Jeong, J. -H., Song, C. -S., Bahl, J., & Lee, D. -H. (2024).
Isolation and whole genome sequencing of North American lineage class I avian orthoavulavirus 1
isolated from wild Eurasian teal in South Korea. Avian Pathology, 53(3), 194-198.
doi:10.1080/03079457.2024.2312116
8. Padykula, I., Damodaran, L., Young, K. T., Krunkosky, M., Griffin, E. F., North, J. F., . . . Tompkins,
S. M. (n.d.). Pandemic Risk Assessment for Swine Influenza A Virus in Comparative In Vitro and In
Vivo Models. Viruses, 16(4), 548. doi:10.3390/v16040548
9. Padykula, I., Damodaran, L., Young, K. T., Krunkosky, M., Griffin, E. F., North, J. F., . . . Tompkins,
S. M. (2024). Pandemic Risk Assessment for a Swine Influenza A Virus in Comparative Human
Substrates. doi:10.1101/2024.02.24.581872
10. Chen, J., Gokhale, D., Liu, L., Rohani, P., & Bahl, J. (2024). Characterizing Potential Interaction
Between Respiratory Syncytial Virus and Seasonal Influenza in the U.S.. PLoS Computational
Biology.
11. Fujimoto, K., Kuo, J., Stott, G., Lewis, R., Chan, H. K., Lyu, L., . . . Bahl, J. (n.d.). Beyond scale-free
networks: integrating multilayer social networks with molecular clusters in the local spread of
COVID-19. Scientific Reports, 13(1). doi:10.1038/s41598-023-49109-x
12. Chen, J., Gokhale, D. V., Liu, L., Rohani, P., & Bahl, J. (2023). Characterizing Potential Interaction
Between Respiratory Syncytial Virus and Seasonal Influenza in the U.S..
doi:10.1101/2023.10.04.23296424
13. Sung, M. -H., Billings, W. Z., Carlock, M. A., Hanley, H. B., Bahl, J., Handel, A., . . . Shen, Y. (2024).
Assessment of Humoral Immune Responses to Repeated Influenza Vaccination in a Multiyear
Cohort: A 5-Year Follow-up. The Journal of Infectious Diseases, 229(2), 322-326.
doi:10.1093/infdis/jiad319
14. Kuhn, J. H., Abe, J., Adkins, S., Alkhovsky, S. V., Avšič-Županc, T., Ayllón, M. A., . . . Økland, A. L.
(2023). Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense
RNA viruses (realm Riboviria: kingdom Orthornavirae: phylum Negarnaviricota). Journal of General
Virology, 104(8). doi:10.1099/jgv.0.001864
15. Yang, J., Skaro, M., Chen, J., Zhan, D., Lyu, L., Gay, S., . . . Arnold, J. (n.d.). The species coalescent
indicates possible bat and pangolin origins of the COVID-19 pandemic. Scientific Reports, 13(1).
doi:10.1038/s41598-023-32622-4
16. Duvvuri, V. R., Hicks, J. T., Damodaran, L., Grunnill, M., Braukmann, T., Wu, J., . . . Bahl, J. (2023).
Comparing the transmission potential from sequence and surveillance data of 2009 North American
influenza pandemic waves. Infectious Disease Modelling, 8(1), 240-252.
doi:10.1016/j.idm.2023.02.003
17. Chen, J., Tan, S., Avadhanula, V., Moise, L., Piedra, P. A., De Groot, A. S., & Bahl, J. (n.d.). Diversity
and evolution of computationally predicted T cell epitopes against human respiratory syncytial virus.
PLOS Computational Biology, 19(1), e1010360. doi:10.1371/journal.pcbi.1010360
18. Kuhn, J. H., Adkins, S., Alkhovsky, S. V., Avšič-Županc, T., Ayllón, M. A., Bahl, J., . . . Økland, A. L.
(2022). 2022 taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the
large orders Bunyavirales and Mononegavirales. Archives of Virology, 167(12), 2857-2906.
doi:10.1007/s00705-022-05546-z
19. Tan, S., Moise, L., Pearce, D. S., Kyriakis, C. S., Gutiérrez, A. H., Ross, T. M., . . . De Groot, A. S.
(2023). H1N1 G4 swine influenza T cell epitope analysis in swine and human vaccines and circulating
strains uncovers potential risk to swine and humans. Influenza and Other Respiratory Viruses, 17(1).
doi:10.1111/irv.13058
20. Kent, C. M., Ramey, A. M., Ackerman, J. T., Bahl, J., Bevins, S. N., Bowman, A. S., . . . Prosser, D. J.
(n.d.). Spatiotemporal changes in influenza A virus prevalence among wild waterfowl inhabiting the
continental United States throughout the annual cycle. Scientific Reports, 12(1). doi:10.1038/s41598-
022-17396-5
21. Chen, J., Tan, S., Avadhanula, V., Moise, L., Piedra, P. A., De Groot, A. S., & Bahl, J. (2022).
Diversity and Evolution of Computationally Predicted T Cell Epitopes against Human Respiratory
Syncytial Virus. doi:10.1101/2022.06.29.498066
22. Prosser, D. J., Chen, J., Ahlstrom, C. A., Reeves, A. B., Poulson, R. L., Sullivan, J. D., . . . Ramey, A.
M. (n.d.). Maintenance and dissemination of avian-origin influenza A virus within the northern
Atlantic Flyway of North America. PLOS Pathogens, 18(6), e1010605.
doi:10.1371/journal.ppat.1010605
23. Hicks, J. T., Edwards, K., Qiu, X., Kim, D. -K., Hixson, J. E., Krauss, S., . . . Bahl, J. (n.d.). Host
diversity and behavior determine patterns of interspecies transmission and geographic diffusion of
avian influenza A subtypes among North American wild reservoir species. PLOS Pathogens, 18(4),
e1009973. doi:10.1371/journal.ppat.1009973
24. Chen, J., Qiu, X., Avadhanula, V., Shepard, S. S., Kim, D., Hixson, J., . . . Bahl, J. (2022). Novel and
extendable genotyping system for human respiratory syncytial virus based on whole-genome
sequence analysis. Influenza and Other Respiratory Viruses, 16(3), 492-500. doi:10.1111/irv.12936
25. Kuhn, J. H., Adkins, S., Agwanda, B. R., Al Kubrusli, R., Alkhovsky, S. V., Amarasinghe, G. K., . . .
Zhou, X. (2021). Correction to: 2021 Taxonomic update of phylum Negarnaviricota (Riboviria:
Orthornavirae), including the large orders Bunyavirales and Mononegavirales. Archives of Virology,
166(12), 3567-3579. doi:10.1007/s00705-021-05266-w
26. Sahajpal, N. S., Mondal, A. K., Njau, A., Petty, Z., Chen, J., Ananth, S., . . . Kolhe, R. (n.d.). High-
Throughput Next-Generation Sequencing Respiratory Viral Panel: A Diagnostic and Epidemiologic
Tool for SARS-CoV-2 and Other Viruses. Viruses, 13(10), 2063. doi:10.3390/v13102063
27. Hicks, J. T., Friedman, K., Qiu, X., Kim, D. -K., Hixson, J. E., Krauss, S., . . . Bahl, J. (2021). Host
diversity and behavior determine patterns of interspecies transmission and geographic diffusion of
avian Influenza A subtypes among North American wild reservoir species.
doi:10.1101/2021.09.29.462321
28. Kuhn, J. H., Adkins, S., Agwanda, B. R., Al Kubrusli, R., Alkhovsky, S. V., Amarasinghe, G. K., . . .
Zhou, X. (2021). 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae),
including the large orders Bunyavirales and Mononegavirales. Archives of Virology, 166(12), 3513-
3566. doi:10.1007/s00705-021-05143-6
29. Sahajpal, N. S., Mondal, A. K., Njau, A., Petty, Z., Chen, J., Ananth, S., . . . Kolhe, R. (2021).
Respiratory Viral Sequencing Panel identifies SARS-CoV-2 variants, transmission and other co-
circulating viruses in Georgia, USA: A Diagnostic and Epidemiologic Tool for Mass Surveillance in
COVID-19 Pandemic. doi:10.1101/2021.07.24.21261046
30. Padykula, I., Damodaran, L., Young, K., Krunkosyk, M., Siepker, C., Stanton, J., . . . Tompkins, S.
(2021). Pandemic risk assessment for a swine influenza A virus in comparative human substrates. In
2021 American Society of Virology.
31. Salimi, V., Viegas, M., Trento, A., Agoti, C. N., Anderson, L. J., Avadhanula, V., . . . Buchholz, U. J.
(2021). Proposal for Human Respiratory Syncytial Virus Nomenclature below the Species Level.
Emerging Infectious Diseases, 27(6), 1-9. doi:10.3201/eid2706.204608
32. Fujimoto, K., Bahl, J., Wertheim, J. O., Del Vecchio, N., Hicks, J. T., Damodaran, L., . . . McNeese,
M. (n.d.). Author Correction: Methodological synthesis of Bayesian phylodynamics, HIV-TRACE,
and GEE: HIV-1 transmission epidemiology in a racially/ethnically diverse Southern U.S. context.
Scientific Reports, 11(1). doi:10.1038/s41598-021-89879-w
33. Tan, S., Gutiérrez, A. H., Gauger, P. C., Opriessnig, T., Bahl, J., Moise, L., & De Groot, A. S. (n.d.).
Quantifying the Persistence of Vaccine-Related T Cell Epitopes in Circulating Swine Influenza A
Strains from 2013–2017. Vaccines, 9(5), 468. doi:10.3390/vaccines9050468
34. Sung, M. -H., Shen, Y., Handel, A., Bahl, J., & Ross, T. M. (n.d.). Longitudinal Assessment of
Immune Responses to Repeated Annual Influenza Vaccination in a Human Cohort of Adults and
Teenagers. Frontiers in Immunology, 12. doi:10.3389/fimmu.2021.642791
35. Fujimoto, K., Bahl, J., Wertheim, J. O., Del Vecchio, N., Hicks, J. T., Damodaran, L., . . . McNeese,
M. (n.d.). Methodological synthesis of Bayesian phylodynamics, HIV-TRACE, and GEE: HIV-1
transmission epidemiology in a racially/ethnically diverse Southern U.S. context. Scientific Reports,
11(1). doi:10.1038/s41598-021-82673-8
36. Zhang, J., Yao, J., Jiang, J., Pan, X., Luo, M., Xia, Y., . . . Fu, T. (2020). Migration interacts with the
local transmission of HIV in developed trade areas: A molecular transmission network analysis in
China. Infection, Genetics and Evolution, 84, 104376. doi:10.1016/j.meegid.2020.104376
37. Kuhn, J. H., Adkins, S., Alioto, D., Alkhovsky, S. V., Amarasinghe, G. K., Anthony, S. J., . . . Zhou,
X. (2020). 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including
the large orders Bunyavirales and Mononegavirales. Archives of Virology, 165(12), 3023-3072.
doi:10.1007/s00705-020-04731-2
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